[ sedfit ]
Applications and Methods of Sedphat
Recommended referencing of Sedfit
Publications used for the development of Sedfit
Recommended referencing of SEDFIT
Generally, for referencing Sedfit in publications I would suggest citing one of the following publications according to which feature of Sedfit is being used. In case of any doubt, I would recommend
P. Schuck (2000) Size distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and Lamm equation modeling. Biophysical Journal 78:1606-1619.
A comparison of different ultracentrifugal analysis methods for studying size-distributions, including c(s) and c(M) is
P. Schuck, M.S. Perugini, N.R. Gonzales, G.J. Howlett, and D. Schubert (2002) Size-distribution analysis of proteins by analytical ultracentrifugation: strategies and application to model systems. Biophysical Journal 82:1096-1111
A general introduction to analytical ultracentrifugation can be found in
J. Lebowitz, M.S. Lewis, P. Schuck (2002) Modern Analytical Ultracentrifugation in Protein Science - A Tutorial Review. Protein Science 11:2067-2079
An introduction to use sedimentation velocity for the study of protein self-association is
P. Schuck (2003) On the analysis of protein self-association by sedimentation velocity analytical ultracentrifugation. Analytical Biochemistry 320:104-124
When using the size-and-shape distributions c(s,M) or the general c(s,*), please reference
P.H. Brown, P. Schuck (2006) Macromolecular size-and-shape distributions by sedimentation velocity analytical ultracentrifugation. Biophysical Journal 90:4651-4661
When using discrete Lamm equation solutions, please reference
P.H. Brown, P. Schuck (2008) A new adaptive grid-size algorithm for the simulation of sedimentation velocity profiles in analytical ultracentrifugation. Computer Physics Communications 178(2):105-120
* P.H. Brown, P. Schuck (2007) A new adaptive grid-size algorithm
for the simulation of sedimentation velocity profiles in analytical
ultracentrifugation. Computer Physics
Communications 178 (2008) 105-120
* P.H. Brown, A. Balbo, P. Schuck (2007) Using prior knowledge in the
determination of macromolecular size-distributions by analytical
ultracentrifugation.
Biomacromolecules 8 (2007) 2011-2024
* P.H. Brown, P. Schuck (2006) Macromolecular size-and-shape distributions by sedimentation velocity analytical ultracentrifugation. Biophysical Journal 90:4651-4661
* J. Dam, P. Schuck (2005) Sedimentation velocity analysis of heterogeneous protein-protein interactions: Sedimentation coefficient distributions c(s) and asymptotic boundary profiles from Gilbert-Jenkins theory. Biophysical Journal 89:651-666 [properties of c(s) when applied to for reacting systems]
* J. Dam, C.A. Velikovsky, R.A. Mariuzza, C. Urbanke, P. Schuck (2005) Sedimentation velocity analysis of heterogeneous protein-protein interactions: Lamm equation modeling and sedimentation coefficient distributions c(s). Biophysical Journal 89:619-634 [properties of c(s) when applied to for reacting systems]
* P. Schuck. (2005) Diffusion-deconvoluted sedimentation coefficient distributions for the analysis of interacting and non-interacting protein mixtures. In: Modern Analytical Ultracentrifugation: Techniques and Methods (D.J. Scott, S.E. Harding, A.J. Rowe, Editors) The Royal Society of Chemistry, Cambridge (in press) (get preprint)
* J. Dam, P. Schuck (2004) Calculating sedimentation coefficient distributions by direct modeling of sedimentation velocity concentration profiles. Methods in Enzymology 384:185-212 [comprehensive review of the concepts and numerical methods]
* P. Schuck (2004) A model for sedimentation in inhomogeneous media. I. Dynamic density gradients from sedimenting co-solutes. Biophysical Chemistry 108:187-200
* P. Schuck (2004) A model for sedimentation in inhomogeneous media. II. Compressibility of aqueous and organic solvents. Biophysical Chemistry 108:201-214
* P. Schuck (2003) On the analysis of protein self-association by sedimentation velocity analytical ultracentrifugation. Analytical Biochemistry 320:104-124
* P. Schuck, M.S. Perugini, N.R. Gonzales, G.J. Howlett, and D. Schubert. (2002) Size-distribution analysis of proteins by analytical ultracentrifugation: strategies and application to model systems. Biophysical Journal 82:1096-1111 (get preprint) [non-linear regression of c(s) and comparison with other methods, extrapolation of ls-g*(s) to infinite time]
* Solovyova, A., P. Schuck, L. Costenaro, C. Ebel (2001) Non-ideality by sedimentation velocity of halophilic malate dehydrogenase in complex solvents. Biophysical Journal 81:1868-1880 [concentration-dependent sedimentation]
* P. Schuck and P. Rossmanith (2000) Determination of the sedimentation coefficient distribution g*(s) by least-squares boundary modeling. Biopolymers 54:328-341. [analysis of g*(s) and introduction of the ls-g*(s) method without Dt-broadening]
* P. Schuck (2000) Size distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and Lamm equation modeling. Biophysical Journal 78:1606-1619. [continuous size-distribution analysis c(s) and c(M) with Tikhonov-Phillips and maximum entropy regularization]
* P. Schuck and B. Demeler (1999) Direct sedimentation analysis of interference-optical data in analytical ultracentrifugation. Biophysical Journal 76:2288-2296. [introduces algebraic noise decomposition allowing systematic noise and jitter to be directly modeled]* P. Schuck (1998) Sedimentation analysis of non-interacting and self-associating solutes using numerical solutions to the Lamm equation. Biophysical Journal 75:1503-1512. [introduction of new moving grid finite element method, extension to self-associating systems by using predictor-corrector scheme]
* P. Schuck, C.E. McPhee, and G.J. Howlett. (1998) Determination of sedimentation coefficients for small peptides. Biophysical Journal 74:466-474. [use of finite difference and Claverie's finite element method in Crank-Nicholson scheme for fast direct boundary modeling]
Obarska-Kosinska A, Taylor JE, Callow P, Orlowski J, Bujnicki JM,
Kneale GG.
HsdR subunit of the type I restriction-modification
enzyme EcoR124I: biophysical characterisation and structural modelling.
J Mol Biol. 2008 Feb 15;376(2):438-52.
last systematic update Jan 2008
Y. Gohon, T. Dahmane, R.W.H. Ruigrok, P. Schuck, D. Charvolin, F. Rappaport, P. Timmins, D.M. Engelman, C. Tribet, J.-L. Popot, C. Ebel. (2008) Bacteriorhotopsin/amphipol complexes: structural and functional properties. Biophysical Journal (Epub)
Alexandra Bonner,
Patricia B. Furtado, Adel Almogren, Michael A. Kerr, and Stephen J. Perkins
Implications of the Near-Planar Solution Structure of Human Myeloma
Dimeric IgA1 for Mucosal Immunity and IgA Nephropathy
J. Immunol., Jan 2008; 180: 1008 - 1018.
Xin Zhang, Todd J. Green, Jun Tsao, Shihong Qiu, and Ming Luo
Role of Intermolecular Interactions of Vesicular Stomatitis Virus
Nucleoprotein in RNA Encapsidation
J. Virol., Jan 2008; 82: 674 - 682.
Renata Grzela, Ewa
Szolajska, Christine Ebel, Dominique Madern, Adrien Favier, Izabela Wojtal,
Wlodzimierz Zagorski, and Jadwiga Chroboczek
Virulence Factor of Potato Virus Y, Genome-attached Terminal Protein VPg,
Is a Highly Disordered Protein
J. Biol. Chem., Jan 2008; 283: 213 - 221.
Christine R. Schar,
Grant E. Blouse, Kenneth H. Minor, and Cynthia B. Peterson
A deletion mutant of vitronectin lacking the somatomedin B domain
exhibits residual pai-1-binding activity
J. Biol. Chem., Jan 2008; doi:10.1074/jbc.M708017200
Alexandra Bonner,
Clémentine Perrier, Blaise Corthésy, and Stephen J. Perkins
Solution Structure of Human Secretory Component and Implications for
Biological Function
J. Biol. Chem., Jun 2007; 282: 16969 - 16980.
Deborah F. Kelly,
Robert J. Lake, Thomas Walz, and Spyros Artavanis-Tsakonas
Conformational variability of the intracellular domain of Drosophila
Notch and its interaction with Suppressor of Hairless
PNAS, Jun 2007; 104: 9591 - 9596.
Reuven Wiener, Yoni
Haitin, Liora Shamgar, M Carmen Fernandez-Alonso, Ariadna Martos, Orna
Chomsky-Hecht, German Rivas, Bernard Attali, and Joel A. Hirsch
The KCNQ1 (Kv7.1) C-terminus, a multi-tieredscaffold for subunit
assembly and protein interaction
Yasuyuki Matsuda,
Takumi Koshiba, Tsukasa Osaki, Haruka Suyama, Fumio Arisaka, Yoshihiro Toh, and
Shun-ichiro Kawabata
An Arthropod Cuticular Chitin-binding Protein Endows Injured Sites with
Transglutaminase-dependent Mesh
J. Biol. Chem., Dec 2007; 282: 37316 - 37324.
Kuo-Hsiang Tang, Marc
Niebuhr, Ann Aulabaugh, and Ming-Daw Tsai
Solution structures of 2 : 1 and 1 : 1 DNA polymerase–DNA complexes
probed by ultracentrifugation and small-angle X-ray scattering
Nucleic Acids Res., Dec 2007; doi:10.1093/nar/gkm1101
Tristan J. Iseli,
Jonathan S. Oakhill, Michael F. Bailey, Sheena Wee, Mark Walter, Bryce J. van
Denderen, Laura A. Castelli, Frosa Katsis, Lee A. Witters, David Stapleton,
Lance Macauley, Belinda J. Michell, and Bruce E. Kemp
AMPK subunit interactions;
1:
1
association requires
1
THR-263 and TYR-267
J. Biol. Chem., Dec 2007; doi:10.1074/jbc.M708298200
Gregor Witte, Roman
Fedorov, and Ute Curth
Biophysical analysis of Thermus aquaticus single-stranded DNA binding
protein
Biophys. J., Dec 2007; doi:10.1529/biophysj.107.121533
Erumbi S. Rangarajan,
Abdalin Asinas, Ariane Proteau, Christine Munger, Jason Baardsnes, Pietro
Iannuzzi, Allan Matte, and Miroslaw Cygler
Structure of [NiFe]-Hydrogenase Maturation Protein HypE from
Escherichia coli and its Interaction with HypF
J. Bacteriol., Dec 2007; doi:10.1128/JB.01610-07
S. L. Matte, T. M.
Laue, and R. H. Cote
Analysis of the Structure and Conformational Changes of Photoreceptor
PDE6 Using Sedimentation Velocity
Invest. Ophthalmol. Vis. Sci., 2007; 48: 607.
M. Bryan Warf and J.
Andrew Berglund
MBNL binds similar RNA structures in the CUG repeats of myotonic
dystrophy and its pre-mRNA substrate cardiac troponin T
RNA, Dec 2007; 13: 2238 - 2251.
Maryline Fresquet,
Thomas A. Jowitt, Joni Ylöstalo, Paul Coffey, Roger S. Meadows, Leena Ala-Kokko,
David J. Thornton, and Michael D. Briggs
Structural and Functional Characterization of Recombinant Matrilin-3
A-domain and Implications for Human Genetic Bone Diseases
J. Biol. Chem., Nov 2007; 282: 34634 - 34643.
Young Kwan Kim, Kenji
Mizutani, Kyung-Hee Rhee, Ki-Hyun Nam, Won Ho Lee, Eun Hye Lee, Eunice Eunkyeong
Kim, Sam-Yong Park, and Kwang Yeon Hwang
Structural and Mutational Analysis of tRNA Intron-Splicing Endonuclease
from Thermoplasma acidophilum DSM 1728: Catalytic Mechanism of tRNA
Intron-Splicing Endonucleases
J. Bacteriol., Nov 2007; 189: 8339 - 8346.
Yana K. Reshetnyak,
Michael Segala, Oleg A. Andreev, and Donald M. Engelman
A Monomeric Membrane Peptide that Lives in Three Worlds: In Solution,
Attached to, and Inserted across Lipid Bilayers
Biophys. J., Oct 2007; 93: 2363 - 2372.
Tae Hyeon Yoo, A. James
Link, and David A. Tirrell
Evolution of a fluorinated green fluorescent protein
PNAS, Aug 2007; 104: 13887 - 13890.
Yuanzheng Zhang, Frank
Maley, Gladys F. Maley, Garry Duncan, David D. Dunigan, and James L. Van Etten
Chloroviruses Encode a Bifunctional dCMP-dCTP Deaminase That Produces
Two Key Intermediates in dTTP Formation
J. Virol., Jul 2007; 81: 7662 - 7671.
Umakhanth Venkatraman
Girija, Alister W. Dodds, Silke Roscher, Kenneth B. M. Reid, and Russell Wallis
Localization and Characterization of the Mannose-Binding Lectin (MBL)-Associated-Serine
Protease-2 Binding Site in Rat Ficolin-A: Equivalent Binding Sites within the
Collagenous Domains of MBLs and Ficolins
J. Immunol., Jul 2007; 179: 455 - 462.
Sylvie Auxilien, Fatima
El Khadali, Anette Rasmussen, Stephen Douthwaite, and Henri Grosjean
Archease from Pyrococcus abyssi Improves Substrate Specificity
and Solubility of a tRNA m5C Methyltransferase
J. Biol. Chem., Jun 2007; 282: 18711 - 18721.
Jade K. Forwood, Anil
S. Thakur, Gregor Guncar, Mary Marfori, Dmitri Mouradov, Weining Meng, Jodie
Robinson, Thomas Huber, Stuart Kellie, Jennifer L. Martin, David A. Hume, and
Bostjan Kobe
Structural basis for recruitment of tandem hotdog domains in acyl-CoA
thioesterase 7 and its role in inflammation
PNAS, Jun 2007; 104: 10382 - 10387.
Norihisa Yasui,
Terukazu Nogi, Tomoe Kitao, Yoshimi Nakano, Mitsuharu Hattori, and Junichi
Takagi
Structure of a receptor-binding fragment of reelin and mutational
analysis reveal a recognition mechanism similar to endocytic receptors
PNAS, Jun 2007; 104: 9988 - 9993.
Robert J. C. Gilbert,
Yulya Gordiyenko, Tobias von der Haar, Andreas F.-P. Sonnen, Gregor Hofmann,
Maria Nardelli, David I. Stuart, and John E. G. McCarthy
Reconfiguration of yeast 40S ribosomal subunit domains by the
translation initiation multifactor complex
PNAS, Apr 2007; 104: 5788 - 5793.
C. T. Ranjith-Kumar,
William Miller, Jin Xiong, William K. Russell, Roberta Lamb, Jonathan Santos,
Karen E. Duffy, Larissa Cleveland, Mary Park, Kanchan Bhardwaj, Zhaoxiang Wu,
David H. Russell, Robert T. Sarisky, M. Lamine Mbow, and C. Cheng Kao
Biochemical and Functional Analyses of the Human Toll-like Receptor 3
Ectodomain
J. Biol. Chem., Mar 2007; 282: 7668 - 7678.
Morris GA, Ang S, Hill SE, et al.
Molar mass and solution conformation of branched alpha(1 -> 4), alpha(1 -> 6)
Glucans. Part I: Glycogens in water
CARBOHYDRATE POLYMERS 71 (1): 101-108 JAN 5 2008
Handa N, Kishishita S, Morita S, et al.
Structure of the human Tim44 C-terminal domain in complex with pentaethylene
glycol: ligand-bound form
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY 63: 1225-1234 Part
12 DEC 2007
Heath C, Posner MG, Aass HC, et al.
The 2-oxoacid dehydrogenase multi-enzyme complex of the archaeon Thermoplasma
acidophilum - recombinant expression, assembly and characterization
FEBS JOURNAL 274 (20): 5406-5415 OCT 2007
Alazard R, Mourey L, Ebel C, et al.
Fine-tuning of intrinsic N-Oct-3 POU domain allostery by regulatory DNA targets
NUCLEIC ACIDS RESEARCH 35 (13): 4420-4432 2007
Kruh NA, Rawat R, Ruzsicska BP, et al.
Probing mechanisms of resistance to the tuberculosis drug isoniazid:
Conformational changes caused by inhibition of InhA, the enoyl reductase from
Mycobacterium tuberculosis
PROTEIN SCIENCE 16 (8): 1617-1627 AUG 2007
Sano K, Asanuma-Date K, Arisaka F, et al.
Changes in glycosylation of vitronectin modulate multimerization and collagen
binding during liver regeneration
GLYCOBIOLOGY 17 (7): 784-794 JUL 2007
Patel TR, Harding SE, Ebringerova A, et al.
Weak self-association in a carbohydrate system
BIOPHYSICAL JOURNAL 93 (3): 741-749 AUG 2007
Bailey MF, Van der Schans EJC, Millar DP
Dimerization of the klenow fragment of Escherichia coli DNA polymerase i is
linked to its mode of DNA binding
BIOCHEMISTRY 46 (27): 8085-8099 JUL 10 2007
Race PR, Solovyova AS, Banfield MJ
Conformation of the EPEC tir protein in solution: Investigating the impact of
serine phosphorylation at positions 434/463
BIOPHYSICAL JOURNAL 93 (2): 586-596 JUL 2007
Fernando AN, Furtado PB, Clark SJ, et al.
Associative and structural properties of the region of complement factor H
encompassing the Tyr402His disease-related polymorphism and its interactions
with heparin
JOURNAL OF MOLECULAR BIOLOGY 368 (2): 564-581 APR 27 2007
Abe M, Ohno S, Yokogawa T, et al.
Detection of structural changes in a cofactor binding protein by using a wheat
germ cell-free protein synthesis system coupled with unnatural amino acid
probing
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 67 (3): 643-652 MAY 15 2007
Lee SC, Stoilova-Mcphie S, Baxter L, et al.
Structural characterisation of the insecticidal toxin XptA1, reveals a 1.15 MDa
tetramer with a cage-like structure
JOURNAL OF MOLECULAR BIOLOGY 366 (5): 1558-1568 MAR 9 2007
Berkowitz SA, Philo JS
Monitoring the homogeneity of adenovirus preparations (a gene therapy delivery
system) using analytical ultracentrifugation
ANALYTICAL BIOCHEMISTRY 362 (1): 16-37 MAR 1 2007
Gabrielson JP, Randolph TW, Kendrick BS, et al.
Sedimentation velocity analytical ultracentrifugation and SEDFIT/c(s): Limits of
quantitation for a monoclonal antibody system
ANALYTICAL BIOCHEMISTRY 361 (1): 24-30 FEB 1 2007
Behlke J, Ristau O, Muller EC, et al.
Self-association of adrenodoxin studied by using analytical ultracentrifugation
BIOPHYSICAL CHEMISTRY 125 (1): 159-165 JAN 2007
Rasa M, Lohmeijer BGG, Hofmeier H, et al.
Characterization of metallo-supramolecular block copolymers by analytical
ultracentrifugation
MACROMOLECULAR CHEMISTRY AND PHYSICS 207 (22): 2029-2041 NOV 24 2006
Ucci JW, Kobayashi Y, Choi G, et al.
Mechanism of interaction of the double-stranded RNA (dsRNA) binding domain of
protein kinase R with short dsRNA sequences
BIOCHEMISTRY 46 (1): 55-65 JAN 9 2007
Bosch M, Le KHD, Bugyi B, et al.
Analysis of the function of spire in actin assembly and its synergy with formin
and profilin
MOLECULAR CELL 28 (4): 555-568 NOV 30 2007
Gunzburg MJ, Perugini MA, Howlett GJ
Structural basis for the recognition and cross-linking of amyloid fibrils by
human apolipoprotein E
JOURNAL OF BIOLOGICAL CHEMISTRY 282 (49): 35831-35841 DEC 7 2007
Wu JW, Yang YS, Zhang JH, et al.
Domain-swapped dimerization of the second PDZ domain of ZO2 may provide a
structural basis for the polymerization of claudins
JOURNAL OF BIOLOGICAL CHEMISTRY 282 (49): 35988-35999 DEC 7 2007
Obiozo UM, Brondijk THC, White AJ, et al.
Substitution of tyrosine 146 in the dI component of proton-translocating
transhydrogenase leads to reversible dissociation of the active dimer into
inactive monomers
JOURNAL OF BIOLOGICAL CHEMISTRY 282 (50): 36434-36443 DEC 14 2007
Heavner GA, Arakawa T, Philo JS, et al.
Protein isolated from biopharmaceutical formulations cannot be used for
comparative studies: Follow-up to "a case study using Epoetin alfa from Epogen
and EPREV
JOURNAL OF PHARMACEUTICAL SCIENCES 96 (12): 3214-3225 DEC 2007
Nemecek D, Gilcrease EB, Kang S, et al.
Subunit conformations and assembly states of a DNA-translocating motor: The
terminase of bacteriophage P22
JOURNAL OF MOLECULAR BIOLOGY 374 (3): 817-836 NOV 30 2007
Brown AK, Meng G, Ghadbane H, et al.
Dimerization of inositol monophosphatase Mycobacterium tuberculosis SuhB is not
constitutive, but induced by binding of the activator Mg2+
BMC STRUCTURAL BIOLOGY 7: Art. No. 55 AUG 28 2007
Lu YL, Harding SE, Michaelsen TE, et al.
Solution conformation of wild-type and mutant IgG3 and IgG4 immunoglobulins
using crystallohydrodynamics: Possible implications for complement activation
BIOPHYSICAL JOURNAL 93 (11): 3733-3744 DEC 2007
Chang HC, Chen LY, Lu YH, et al.
Metal ions stabilize a dimeric molten globule state between the open and closed
forms of malic enzyme
BIOPHYSICAL JOURNAL 93 (11): 3977-3988 DEC 2007
Martin CA, Longman E, Wooding C, et al.
Cd36, a class B scavenger receptor, functions as a monomer to bind acetylated
and oxidized low-density lipoproteins
PROTEIN SCIENCE 16 (11): 2531-2541 NOV 2007
Stead MA, Trinh CH, Garnett JA, et al.
A beta-sheet interaction interface directs the tetramerisation of the Miz-1 POZ
domain
JOURNAL OF MOLECULAR BIOLOGY 373 (4): 820-826 NOV 2 2007
Roberts BR, Tainer JA, Getzoff ED, et al.
Structural characterization of zinc-deficient human superoxide dismutase and
implications for ALS
JOURNAL OF MOLECULAR BIOLOGY 373 (4): 877-890 NOV 2 2007
Pivovarova AV, Chebotareva NA, Chernik IS, et al.
Small heat shock protein Hsp27 prevents heat-induced aggregation of F-actin by
forming soluble complexes with denatured actin
FEBS JOURNAL 274 (22): 5937-5948 NOV 2007
Gress A, Volkel A, Schlaad H
Thio-click modification of poly [2-(3-butenyl)-2-oxazoline]
MACROMOLECULES 40 (22): 7928-7933 OCT 30 2007
Bunkoczi G, Salah E, Filippakopoulos P, et al.
Structural and functional characterization of the human protein kinase ASK1
STRUCTURE 15 (10): 1215-1226 OCT 2007
Jitrapakdee A, Surinya KH, Adina-Zada A, et al.
Conserved Glu40 and Glu433 of the biotin carboxylase domain of yeast pyruvate
carboxylase I isoenzyme are essential for the association of tetramers
INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY 39 (11): 2120-2134 2007
Lee MJ, Huang HM, Lin W, et al.
Activation of Helicobacter pylori inorganic pyrophosphatase and the importance
of Cys16 in thermostability, enzyme activation and quaternary structure
ARCHIVES OF MICROBIOLOGY 188 (5): 473-482 NOV 2007
Heath C, Posner MG, Aass HC, et al.
The 2-oxoacid dehydrogenase multi-enzyme complex of the archaeon Thermoplasma
acidophilum - recombinant expression, assembly and characterization
FEBS JOURNAL 274 (20): 5406-5415 OCT 2007
Nyarko A, Mosbahi K, Rowe AJ, et al.
TPR-Mediated self-association of plant SGT1
BIOCHEMISTRY 46 (40): 11331-11341 OCT 9 2007
Porrua O, Garcia-Jaramillo M, Santero E, et al.
The LysR-type regulator AtzR binding site: DNA sequences involved in activation,
repression and cyanuric acid-dependent repositioning
MOLECULAR MICROBIOLOGY 66 (2): 410-427 OCT 2007
Tarasev M, Kaddis CS, Yin S, et al.
Similar enzymes, different structures: Phthalate dioxygenase is an
alpha(3)alpha(3) stacked hexamer, not an alpha(3)beta(3) trimer like "normal"
Rieske oxygenases
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS 466 (1): 31-39 OCT 1 2007
Stewart CR, Haw A, Lopez R, et al.
Serum amyloid P colocalizes with apolipoproteins in human atheroma: functional
implications
JOURNAL OF LIPID RESEARCH 48 (10): 2162-2171 OCT 2007
Sanchez-Barbero F, Rivas G, Steinhilber W, et al.
Structural and functional differences among human surfactant proteins SP-A1,
SP-A2 and co-expressed SP-A1/SP-A2: role of supratrimeric oligomerization
BIOCHEMICAL JOURNAL 406: 479-489 Part 3 SEP 15 2007
Jobichen C, Li M, Yerushalmi G, et al.
Structure of GrIR and the implication of its EDED motif in mediating the
regulation of type III secretion system in EHEC
PLOS PATHOGENS 3 (5): 639-646 MAY 2007
Byres E, Alphey MS, Smith TK, et al.
Crystal structures of Trypanosoma brucei and Staphylococcus aureus mevalonate
diphosphate decarboxylase inform on the determinants of specificity and
reactivity
JOURNAL OF MOLECULAR BIOLOGY 371 (2): 540-553 AUG 10 2007
Alazard R, Mourey L, Ebel C, et al.
Fine-tuning of intrinsic N-Oct-3 POU domain allostery by regulatory DNA targets
NUCLEIC ACIDS RESEARCH 35 (13): 4420-4432 2007
Ostendorp T, Leclerc E, Galichet A, et al.
Structural and functional insights into RAGE activation by multimeric S100B
EMBO JOURNAL 26 (16): 3868-3878 AUG 22 2007
Akhter T, Zhao L, Kohda A, et al.
The neck of bacteriophage T4 is a ring-like formed by a hetero-oligomer of gp13
and structure gp14
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 1774 (8): 1036-1043 AUG
2007
Gerard FCA, Ribeiro ED, Albertini AAV, et al.
Unphosphorylated Rhabdoviridae phosphoproteins form elongated dimers in solution
BIOCHEMISTRY 46 (36): 10328-10338 SEP 11 2007
Ma C, Hou H, Tian W, et al.
Expression, purification and characterization of critical domains of munc13-1
ACTA BIOCHIMICA ET BIOPHYSICA SINICA 39 (8): 617-623 AUG 2007
Rajagopal S, Kent SBH
Total chemical synthesis and biophysical characterization of the minimal isoform
of the KChIP2 potassium channel regulatory subunit
PROTEIN SCIENCE 16 (9): 2056-2064 SEP 2007
Der Ou H, Lohr F, Vogel V, et al.
Structural evolution of C-terminal domains in the p53 family
EMBO JOURNAL 26 (14): 3463-3473 JUL 25 2007
Kruh NA, Rawat R, Ruzsicska BP, et al.
Probing mechanisms of resistance to the tuberculosis drug isoniazid:
Conformational changes caused by inhibition of InhA, the enoyl reductase from
Mycobacterium tuberculosis
PROTEIN SCIENCE 16 (8): 1617-1627 AUG 2007
Prieto J, Redondo P, Padro D, et al.
The C-terminal loop of the homing endonuclease I-CreI is essential for site
recognition, DNA binding and cleavage
NUCLEIC ACIDS RESEARCH 35 (10): 3262-3271 MAY 2007
Madern D, Ebel C
Influence of an anion-binding site in the stabilization of halophilic malate
dehydrogenase from Haloarcula marismortui
BIOCHIMIE 89 (8): 981-987 AUG 2007
Jorissen HJMM, Ulery PG, Henry L, et al.
Dimerization and DNA-binding properties of the transcription factor Delta FosB
BIOCHEMISTRY 46 (28): 8360-8372 JUL 17 2007
Pavlov GM, Korneeva EV, Ivanova NP, et al.
Synthesis and hydrodynamic and molecular characteristics of N-methacryloylglucosamine-N-vinylformamide
copolymers
RUSSIAN JOURNAL OF APPLIED CHEMISTRY 80 (5): 777-782 MAY 2007
Saxl RL, Maley GF, Hauer CR, et al.
Significance of mutations on the structural perturbation of thymidylate synthase:
Implications for their involvement in subunit exchange
PROTEIN SCIENCE 16 (7): 1439-1448 JUL 2007
Boukari H, Sackett DL, Schuck P, et al.
Single-walled tubulin ring polymers
BIOPOLYMERS 86 (5-6): 424-436 AUG 5 2007
Kroe RR, Baker MA, Brown MP, et al.
Agonist versus antagonist induce distinct thermodynamic modes of co-factor
binding to the glucocorticoid receptor
BIOPHYSICAL CHEMISTRY 128 (2-3): 156-164 JUL 2007
Race PR, Solovyova AS, Banfield MJ
Conformation of the EPEC tir protein in solution: Investigating the impact of
serine phosphorylation at positions 434/463
BIOPHYSICAL JOURNAL 93 (2): 586-596 JUL 2007
Stroebel D, Sendra V, Cannella D, et al.
Oligomeric behavior of the RND transporters CusA and AcrB in micellar solution
of detergent
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 1768 (6): 1567-1573 JUN 2007
Dey S, Hu ZQ, Xu XL, et al.
The effect of hinge mutations on effector binding and domain rotation in
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